NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196978_1000004

Scaffold Ga0196978_1000004


Overview

Basic Information
Taxon OID3300021067 Open in IMG/M
Scaffold IDGa0196978_1000004 Open in IMG/M
Source Dataset NameSoil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20-13C
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)561312
Total Scaffold Genes456 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)335 (73.46%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.305Long. (o)-116.2547Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046937Metagenome / Metatranscriptome150Y
F061714Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0196978_1000004188F061714N/AMELVVIIVAALVGFWLFFFVLKRVLRMAIRLAIVGGLLLALLVGAVAWWWYEPFGGSSNANRNAPARSNRNSR
Ga0196978_1000004439F046937N/AMSEQGKCPMGKHPWVATFFVLAFVLIFFAHKLGLL

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