NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206684_1038894

Scaffold Ga0206684_1038894


Overview

Basic Information
Taxon OID3300021068 Open in IMG/M
Scaffold IDGa0206684_1038894 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 100m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1671
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.6907Long. (o)-122.3448Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037425Metagenome / Metatranscriptome168Y
F039346Metagenome / Metatranscriptome164Y
F044731Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0206684_10388941F039346AGGAMFASFTITLIECLEIAFITLLISQTKVHKPTVVTYGSLGLLGGLLSAYYLHDILENYEWLMYAILSSLFLYLFIKNKEIVTHIKQHVDDISNSSSTVLFLTAFFIYGRESFEIFSNLFLNPDASWSAAICAVIVAGAIYMFARDSKVKVYIFKFGYWAYLGFALWFGYEALEHLHIL
Ga0206684_10388943F044731GAGMTLEEIYRKYEKLTLEICTGETTHDNTLECAGAMMGQAMKLYKLVLSPEDFDALMHIISQASGLDGETFNKDDFPSGTLH
Ga0206684_10388944F037425GGAMAWDDFRKQYQGIIKNLLNNVDICNERYAKEGDEGYLVQRKVYIKEIEEIKTMIKKKELELGYYKES

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