NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210382_10003042

Scaffold Ga0210382_10003042


Overview

Basic Information
Taxon OID3300021080 Open in IMG/M
Scaffold IDGa0210382_10003042 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5449
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011813Metagenome287Y
F077142Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0210382_100030426F077142N/AVPKETIAIVLFMGLAFGLFWGCLSLVLWSANEHTPAWIIAPLWLTAEIGTRLPVHPYLAGVVASGFVGLVPAAVFLALARLRGW
Ga0210382_100030427F011813GGAMTDEPSLKEIGERLERLDAPIRIWREQRDRAFAAAFGPQKGKLSNLMARLPQGANAAALGLGPRDEVFAVFDEICDLYARSDAPRCAIIRGIVHEREAHLLLDEYLGYASRILKQGGRPEWLERGIVAASIDDQRRDYRDWLMSLGDLYLSAWAAHLDPSPVLKRIAERSNPERHAAAPTPTRDALRGFEDSAYFATSIQPQLL
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