NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210382_10216961

Scaffold Ga0210382_10216961


Overview

Basic Information
Taxon OID3300021080 Open in IMG/M
Scaffold IDGa0210382_10216961 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)833
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021061Metagenome / Metatranscriptome220Y
F086972Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0210382_102169611F021061N/AADVKRAGAFLPMWALQFVIGMFAVLLAVGLFAALVGSVVRGPATFFDEVGKTVSRIAPQPQADIRSDAALKAAIKAMPDGRLRVASIVADQDRVVFTVTADRAAVKAAVQAGDELRLSRAGDVEIVPTGIPGLVDRIQQAIDELRRSWFGK
Ga0210382_102169612F086972AGGAMDAFFVGLVVGVAFGMLVVGFLAVGSYQRGFSQALERRKEWRGELVARQVVARRALEQLRKAS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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