NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210379_10245417

Scaffold Ga0210379_10245417


Overview

Basic Information
Taxon OID3300021081 Open in IMG/M
Scaffold IDGa0210379_10245417 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)777
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9208Long. (o)-106.9484Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013066Metagenome274Y
F027435Metagenome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0210379_102454171F013066N/ASVPDRVTVARKSFIERNPELIKRYWKASIRGYQFIRIAPENYPFLRHVEAKLRLTNPDESERMRDLWSMELMEGAFFPMDGQLSVEGIWRILEEHQDAGVLAKSITRADVAEMVQQDLVKEAWAEVSQTDEIKRNLERLQPVIERHGY
Ga0210379_102454172F027435GAGMKLRVGNGCWHARHVLDAAVTLEAGFYAREGLDVEVVHAKINPGAIDSTRPEGERYDEVGTVVRDMIAFRIDIIPDVHVRTPFAERALGNDEVRI
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