NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210380_10032601

Scaffold Ga0210380_10032601


Overview

Basic Information
Taxon OID3300021082 Open in IMG/M
Scaffold IDGa0210380_10032601 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2231
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Schlegelella → Schlegelella koreensis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9208Long. (o)-106.9484Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004608Metagenome / Metatranscriptome431Y
F019892Metagenome / Metatranscriptome227N

Sequences

Protein IDFamilyRBSSequence
Ga0210380_100326012F004608GGAGMQTSFDQTLPQNSRWDQQGAEYVRSSIDWCARCSRRLVGLNPGLDAEHALDLAHDLSHDDNLRAMSPEVVAEQMHQVDLRTDT
Ga0210380_100326014F019892GGAMPQTRISLYRASLLADNLGIRLCLAAVMVMPSALVFLLPILALLGAPDDALLPGGPVRDASGLWAPLSFALGIGFAAAWLRIVFAGGRLLRRPGPRRVVTAGLALGIVALAIELIVLATAPSQEGAGWLLLAALAVSIFLLAGTLGQPRTDRWHRV
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