NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206677_10000095

Scaffold Ga0206677_10000095


Overview

Basic Information
Taxon OID3300021085 Open in IMG/M
Scaffold IDGa0206677_10000095 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)71992
Total Scaffold Genes119 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (28.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001222Metagenome / Metatranscriptome743Y
F003188Metagenome / Metatranscriptome502Y
F015473Metagenome / Metatranscriptome254Y
F035837Metagenome / Metatranscriptome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0206677_1000009540F003188N/AMVSPNKKIREVLFSLHPLSYRIKKKGLDKESMNKKLFTGIITQLKKIEDRRDFMAEEIGMDMTTYEDQFFNVIEDLMKMSFNKSQLGLIQLYLYTLSPDKEWDGTIVVEVGESKEEKVVKFKTPEEVWKVVTEFS
Ga0206677_1000009541F001222N/AMKQLEKYIRNVLSESAKINFAGHKFVLKVDTNEDPQKKGVKVQFLPTEFGTLTKTQQDDIAIELESRLEKGLASFDMRVERDRNLKDKTIIGFFIYIEYFDRIIRKALSGQNPTTDDPVDGPAEV
Ga0206677_1000009570F015473AGAAGMETDVVHLNYLIKMSKEKKEGFFSNVRNQLIAGAGVVLTTLGTVFTDKIEELFGVEDDTAIEVVQEQNVNVEGPSITINIPEQQKDTVVKKVYVKPKPKLTDTEKRKKEIDW
Ga0206677_100000959F035837AGGMIQIKDLKVGQIFQMEGLTENGDTVQADCTLHAYNGMNKYVVESDGITILFDGEDVVTKVYK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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