NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206677_10000636

Scaffold Ga0206677_10000636


Overview

Basic Information
Taxon OID3300021085 Open in IMG/M
Scaffold IDGa0206677_10000636 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33214
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (77.08%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013531Metagenome / Metatranscriptome270Y
F019114Metagenome231Y
F048285Metagenome148N
F050758Metagenome145Y
F097272Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0206677_1000063637F013531GGAGGMVNEKKKEQPLLSFQDKDGNPREIFERDLTDATAPLVEEISRDLQAEQQLSEAYQLATKTVHHMEAVRKNVANTLEKLEKELPPYKKPIKIEGVTKEIN
Ga0206677_1000063639F050758N/AMATQQEKLIYFMRKAKILVEDCMDKNGDDDLILPLGANRVLADVVDALEEEISRADDYEEYDPG
Ga0206677_1000063640F097272GGAGGMDLTEFGLDKIEVGESSGGGDRVKPGRYNFEYAGSEMIEGKNGWKALKIHFDVEGEIIKVSHAFTMAHNNDKPVEIGRESLMKMLNAMGVASMKNSDELLGKKVEGELVVGEKGYLEVKDDFGNGWKPYGSTATKENVDPKDVLPKEDKEEMFPSDVEDEDDLPF
Ga0206677_1000063644F019114GAGMLGCNTITNHYMNRENFRSKMKQLESRMIEARDEFYRNKRRKGFMAFWWSDPLHYLLVLEVAIADASSKSINFETIVKLLPGSMGSRSTVATVLEDFVARGYMCKDVGKDKRERVYTICKDSMVLMNEWFTKRDFSLRAVS
Ga0206677_1000063648F048285N/AQLEQATAFILETNKYIYEQAKELATQHLQAEDNKNFKFRVKRYEPESKETLLHFADEITAWAECEKNYPLMDFIDKFFKIKKGY
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Institute for Fundamental Biomedical Research
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