NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206677_10007523

Scaffold Ga0206677_10007523


Overview

Basic Information
Taxon OID3300021085 Open in IMG/M
Scaffold IDGa0206677_10007523 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8081
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (14.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004688Metagenome / Metatranscriptome428Y
F016342Metagenome / Metatranscriptome248Y
F037476Metagenome / Metatranscriptome168Y
F049999Metagenome146N

Sequences

Protein IDFamilyRBSSequence
Ga0206677_1000752310F004688N/AMPLIHMNGSDEDRLRRQYNDLFCAVSDAQVKLLYDTDFHERDYYPLGNEAWDKAYQEREEVKEAMTKVYQYAKQHMHYLDYGKEPLPDED
Ga0206677_1000752311F049999N/AMEEVNRLQFEVEASSEAAAIDLVEVGEAGDPTDQRAMEFNCLSVKEYIK
Ga0206677_100075236F016342N/AMKARDYYALKDEGILKAVEEKDIIKQSSQGNFGMYDVMPVNNARIVSEACDRFFKSRNIRYGSAWFHDRIDRKKKIQQAKDERTKNN
Ga0206677_100075237F037476N/AMNEPKTIKLTGVFPKTFRATKCETGRADCCFEYTDEKKQVFFEICKHGAVSLHEHFTELGYTELAPKVEFPTWHPNYKKS
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