NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0206677_10012148

Scaffold Ga0206677_10012148


Overview

Basic Information
Taxon OID3300021085 Open in IMG/M
Scaffold IDGa0206677_10012148 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5796
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (11.54%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)30
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020790Metagenome / Metatranscriptome222Y
F056151Metagenome / Metatranscriptome138Y
F062272Metagenome / Metatranscriptome131Y
F065620Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0206677_1001214810F056151N/AMQKLKTNHYKSQILNTKKLKLNNNVYIGFNINNLQDVKIKDKLNICDVVEFNIKGMSYINKNKIKKSTLQFI
Ga0206677_1001214815F065620N/AMNSIKELNTIVQEFDHTMAKIELAINNGGNSLNKQEELLLDYQDYQARKFLAIKEINKLINK
Ga0206677_1001214818F020790N/AMNITKQMMEEKLLQIANFEQKHGADHGITSVNAMKKYCTNEKYRQRVRDFNTASVETIKHYTKYGIKA
Ga0206677_1001214821F062272N/AMYDKKLIANIANDIIEEVNEHIDNTIHWQLDPSEFQLDEFDDLYELELQIKQQLLFSLIKKVTK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.