NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206677_10013737

Scaffold Ga0206677_10013737


Overview

Basic Information
Taxon OID3300021085 Open in IMG/M
Scaffold IDGa0206677_10013737 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5316
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (21.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002035Metagenome / Metatranscriptome601Y
F021182Metagenome / Metatranscriptome220Y
F051859Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0206677_1001373713F051859N/AMRRVGDTIEFKFAGAKEKGTIKEIKKKGNKILSYSIWDGYYNYTITKDMIL
Ga0206677_100137377F021182N/AMSKKYPNGYWPKIEYWTGKLKDEVANTKMPDLKVIDSIHRKLDYFIQKQWDLTISVK
Ga0206677_100137378F002035GGAMVMYLHFDKGKWYILSEPKSPGLVKKEYLPIGNRLVYPKKWGRKQAAEVLLGFQIDEVEKILDVTLDRLEYLKELKKDVDTW
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