NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206677_10034074

Scaffold Ga0206677_10034074


Overview

Basic Information
Taxon OID3300021085 Open in IMG/M
Scaffold IDGa0206677_10034074 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2819
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005129Metagenome / Metatranscriptome411Y
F037230Metagenome / Metatranscriptome168Y
F051139Metagenome / Metatranscriptome144Y
F072257Metagenome / Metatranscriptome121Y
F092077Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0206677_100340742F005129N/AMNYKIKIAEVNKSFSLAHHSYIDLGVFTVNATTYSFLYPAVKTDWGCDMNETELEFLVNNKKCKYVGFKELYTQLYGNSFATFEADIIRQIEEVVAKQIVEEYPGTDVNF
Ga0206677_100340743F092077N/AMTKELSPLQRSFDRINELIPNNSDVLLRCSLYEMCVELTNKSFAEGINTKY
Ga0206677_100340744F072257N/AMQELDRVVHQWCDDNDRWMYIEYDRDGKVMGLNFMQGDEYECFKKDWCVSDKGLTAFYKQMLYTFSYEQGNVPEHCFINSCMWAYHAAISSRDEHAEPCRRNTHCKR
Ga0206677_100340745F051139N/AMQKAELELPVKQFHKLYDFLGEILDHEAETNDFNMENSDIELIEDTRNELFNQIPDEKPTETTYAFTTAVDAHQVTPLKLYTVRRCTDHGSGFLIINDRRSEVYCIENGCSHLSSDQSENWNLITVTNK
Ga0206677_100340748F037230N/AMKNLTEEYVNIDWSGICSDFDLEHGDISPEQSFEIDRALGNINEVLHGFIEQNRPTVHIGTATITNIEHNVLMVALDHMYEHLDDLVGDLETFEEESTNLKRIDAVNSLKKLFKK
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