NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206677_10217271

Scaffold Ga0206677_10217271


Overview

Basic Information
Taxon OID3300021085 Open in IMG/M
Scaffold IDGa0206677_10217271 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)808
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030388Metagenome / Metatranscriptome185Y
F049527Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0206677_102172711F030388N/ASMARSRKNGRFTKTTRRRRSKPKTNLTNIAVSALVANSITQGAFNSNLMDFFTGKTDGVYKAGVDGSTRLTLPELLGAGRIKFGGNYGTGYDLQTVLVKNLKDNWLQMAMGVVLIPVVAKTATKLIRKPVILPANRMLKSVGLDVKV
Ga0206677_102172712F049527GGAMTTQGTEITVGNPSMSKVFVDTSTDGQWSGNVLLDSIAGQSIGILIPNATLTFAQAQYTAGLMAYRLQNAQSLMVSARGFGVKDGQYCMSESSIGPVRVNPNDILTVYPLAVAGGTASNALA
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