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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021088 Open in IMG/M |
| Scaffold ID | Ga0210404_10000023 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 284866 |
| Total Scaffold Genes | 259 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 209 (80.69%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Massachusetts | |||||||
| Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002012 | Metagenome / Metatranscriptome | 604 | Y |
| F002288 | Metagenome / Metatranscriptome | 574 | Y |
| F042451 | Metagenome / Metatranscriptome | 158 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0210404_10000023120 | F042451 | GAG | VQNYFLLINLLAGSALSRQDLIPGPYAFLRPTERLHARRLGPILLLFALALPSYAQEFVPEQVVFPITDFKPDIRHPAPFSMKFGTGFCLDPDCRFVGTNYHVAKLMGKYVRIKGVFSAHRYLDSDPDDAGAQDINLAGGAGSLKYTPAHDLAIYEMRHPVKNFHGIGFDADDLENSPEAEIYAYPFHWNPKRGLVHWHGKFIGKTHQGLLAFSYAEGRVRGGASGGIVVDSKTKKIVGILNGIGEGKDRIALAVPVKELSDFVTRAQPYLQATLFPKTVFVSPVSEDLYPLYIWPRAEGLSQRTVEPSEVVKLRRTAQFLADSMRNFTATETFAWGRDNRESEVTDAYETLIVDGWQRWRRLGDKKFYDDVPFPPLDASIVSGPEWSQLPRMVGTELNMKIHQAPDAVVGGRTVHVFQYTANVEDRVCSFRSVMNFVFFKRSTTRFYDCHGEVWMDESGIILRISEALDLSGPWYLWWGVMTYGWLEKDGMQYLVPVTIATQAAHNKTYWCRGLFTDYKMFRVKSRLVMPTEPEQAQESALGAQ |
| Ga0210404_10000023140 | F002288 | N/A | MGEDEGVRKRRVFQWSKQARDLAREYKQRMIAGQHLAQADRSVLAARLVEISGNPREACLRFLCRSGVAQKRSYREWTKPEQRRLLDLITTMPVDEAAKILRRPPGSVRSMLHRLGIGGRTGREWFTKFSLSRALHTRPEEIQKWIDRGWLKSRSLSSAGLQAKIIYADDFCQFVKEHGHAAVSRRLSHDALWFVQNYVFPPSHAELLSVRGTYKKHDGGRETNENAEPQLDSGSEGETE |
| Ga0210404_10000023197 | F002012 | N/A | MPLASTTLMSVLTRSARTALSIPKLLSTHSFLAASLMLLQGHSTRRNNVYNILWAVVFGFATLNILSLAARRFEPNRRGMTFGELMAVLVVLLSIFLLGWELLGLIHIFPIKLHR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |