NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210404_10000041

Scaffold Ga0210404_10000041


Overview

Basic Information
Taxon OID3300021088 Open in IMG/M
Scaffold IDGa0210404_10000041 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)118357
Total Scaffold Genes111 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)80 (72.07%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003398Metagenome / Metatranscriptome489Y
F004328Metagenome / Metatranscriptome443Y
F005421Metagenome / Metatranscriptome401Y
F005712Metagenome / Metatranscriptome392Y
F023651Metagenome / Metatranscriptome209Y
F038764Metagenome / Metatranscriptome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0210404_10000041103F038764GGAGGMFTIRPRGRNSRALWFALPMLAVSAFATEPRPADKETAVSRDSVIRIVQQIQTADYEGDRATLNRLYEQLVPFVDEPEIASRVRYWRGFAKWRRGVNGFNETPTPTDLAEDLAQAESEFDAALQRDPGFVDAKVGAASCVGTRLFLERVFSKEKDPERLKQILAPVSQLLNEAKAAAPENPRLLWVVGPNEWNRPPERGGGQDKAIATYQKGLDTIRKHTENSSDPLEPTWGEPELLMSLAWSNLNRTTPDLSAAEQYAQAALKLVPYWHYVRDILVPQIHAAQAKAH
Ga0210404_10000041108F005712AGGAGMKSIRRFAYAAVLLLSALTFAPSLASAQEAAGTFTLTHEVRWQNAIVPAGKYRFTMGANGPSELLTLSKISGSGAGFMLLVTDTEASKPSDLSRLVVVSRPGGSFVSTMQLPEFGVTLHFAVPSETREVAQSAATSTASAAR
Ga0210404_1000004113F004328AGGAMPDQTINPAPVPPATPSTAANTAPQTAQRGPTINIADEFGTAKRNLPPVKVLLLATAGVLIIAGIAAFLQRAKPQAAGSLDSVVAVEIPGQSAVLVALTFTLHNSREKSLWVHGVQAKLATSSGELSSDAVSAVDFDRYYQAFPALKANAQSALAPEDKLQPGQEVKRTVIVSFPVTMEGFNQRRSVSVVIQPYDQPVPVVLTK
Ga0210404_1000004141F005421AGGMRFSSRWLTWLCLSLMLWTAVAESTHNHPNKTESASCSICVVAHSTTPTASSNHARPVFAAVGQLQEEEVIAKARLNVFDLGIRGPPTV
Ga0210404_1000004165F003398GGALQPHVPTREGYNPLIMAIRNIESPPVSEVCARVKHLGYAASGRVRLYGEEFEVVSDPFPEADGIAVHVTTKKDSRVRVLQLPATVLQSVRGRGKSAA
Ga0210404_1000004178F023651GAGGMSRKDVLVLASRTLALLLVVWALAEASYLPESLHSFLRYINREPGSSTAIQYWRHYYLIRLSFGLTRMLGFSLLARWLFRGGPEVEELLSPSTPHEQNAGQN
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