NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210404_10000055

Scaffold Ga0210404_10000055


Overview

Basic Information
Taxon OID3300021088 Open in IMG/M
Scaffold IDGa0210404_10000055 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)93095
Total Scaffold Genes72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)58 (80.56%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000564Metagenome / Metatranscriptome1021Y
F002101Metagenome / Metatranscriptome593Y
F003337Metagenome / Metatranscriptome493Y
F004095Metagenome / Metatranscriptome453Y
F015836Metagenome / Metatranscriptome251Y

Sequences

Protein IDFamilyRBSSequence
Ga0210404_1000005543F000564AGGAGMIIHLTPEQEQRVQAVLSRGVYESVEEVVDAALAAVEQRTVPGFAGTPDELDAMLAEGLVSKATPEAEFWGSVNKQTPCSQSTRPVRLPKSS
Ga0210404_1000005546F015836N/AMLELMIVVVLILTMTAITYISLLPTFNRAHLEGSYSTTLMALRNTRNLAIAQSHEYYVVFNPGGFPAGTILIQYQPPAVGGIAPPLQQVITYSIPPDVTFAVRAGLPAPPDGFGAGIVPIDFGQGLGAGNLNYVVFMPDGSSRDNLGNYNSGIVYLTRASDAIYSSRAITVWGTTGRVRGWRLDQKAGAPIWEQE
Ga0210404_1000005566F003337AGGMCVSALRNFLCWAMVVLFPLSLLAADTGSAIVHSKGGVWVNGSEVADSTAIFPGDLLETKPGSVANLDAEGSSVLIQPESVVKFQGTFLSLEHGSVSVGTSTSMSVHVNCIKVEPVSNERTQYDVADISGTVQVAARKNDVNITQAGVLRKTPAQDNASQSATVHEGQQATRDESAVCGAAARPGAAGNAPNTKWIEIGAGAGGGVLVLCLLLCKGTKPSNVSPSKP
Ga0210404_1000005568F004095AGGAGMSAINGDKARFNRRRRQKISRRQSNEKMLKALAEKHLVAPAKPANLKEKVA
Ga0210404_1000005569F002101AGGAGMTAPVIALSLSTPDGSPVKKKRVLLLDTSQTKRDLRADVMRKLGIDVDCAADVLEARCWWRADLYNLVLINVAGETDSRDKFCTDLRSATPPQRIAFFVGGPEYLAAAPHSDEGPAEPDADVLHKEMVAALLAQAAEHSSQRWGILEACRKISSVRSVSEARSRAIRETPRPSRWAEAIEQHSAPEATKPQPLFTTEREELL
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