NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210404_10273988

Scaffold Ga0210404_10273988


Overview

Basic Information
Taxon OID3300021088 Open in IMG/M
Scaffold IDGa0210404_10273988 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)923
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002012Metagenome / Metatranscriptome604Y
F008042Metagenome / Metatranscriptome340Y

Sequences

Protein IDFamilyRBSSequence
Ga0210404_102739881F002012N/AMALSPTTFIMCGFTRTRAALSLHNLLSTHSAALAVLVMLQRHSGRRNDVYNILWAVVFGFATLNILSLAARRFEPNRRGLTFGELMAVLIVLLSIFLLGWELLGVFHIFPIKLHR
Ga0210404_102739882F008042N/AMAEPRVIFFDVGNTLLFPNRSKMLDAIASDRHPTLDQWQALERRTKQEFDLGMQNGRVDHGFWWTFHTYLLQQLGHDTNLRDVLVEKTQNSANWDQIQPGTRNSLDRLREKFRMAVISNADGGIERVLSRCGIADCFESI
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