NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194122_10455980

Scaffold Ga0194122_10455980


Overview

Basic Information
Taxon OID3300021092 Open in IMG/M
Scaffold IDGa0194122_10455980 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015021 Mahale Deep Cast 10m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)641
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.1786Long. (o)29.658Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008024Metagenome / Metatranscriptome340N
F023322Metagenome / Metatranscriptome210N

Sequences

Protein IDFamilyRBSSequence
Ga0194122_104559801F023322N/ASSDPSLINQLWCRSMIFFNVVAWERAIAELANVDAVGAYWLTKEEFPQIADHNNPNGYPYFAGTFWWAKSSHIRKLGEPVREHRWQAEHWIGKAEGMTVYDSCKGWPAPDKFIITF
Ga0194122_104559802F008024N/AMKLQDLTIDQFQRIAALEFSPALNDADKRVGVVAIVEGVEVAIVRDMPAKSLTKRYKAIVKEWNELPALAYKRKFKAGGKWWIPTVFTDELTAGQL
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