NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214162_1000037

Scaffold Ga0214162_1000037


Overview

Basic Information
Taxon OID3300021108 Open in IMG/M
Scaffold IDGa0214162_1000037 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29236
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (38.24%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, WI
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024059Metagenome / Metatranscriptome207Y
F054672Metagenome139N
F081039Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0214162_100003720F081039AGAAGMNTEQALNNLYAAARLAPLPAEQHEIIRKSAEVLVEALKPKDAPKPE
Ga0214162_100003722F024059AGTAGMQVIAQSGTTHRNLTVSSAAANFIGAALAANTSHVYWTLAGADMRFTIDGTTPTASDGHIIKDGNSGIWSRTWAESTKVIAVSGSGVFTISELNYL
Ga0214162_100003733F054672N/AMISPASAIIVSSISESGSRTLESREPTKAMLCLELLADGSTWQQVADETGWSFNQIGAVKARHEVAIEVRKKQLAADGFEMAEGIRLLMKQKMAMLADNPDALAKVNVKDLALSYGIAVDKGMLALGENKMVIEHKAGKPSLEDAMKAIEEARAALQKEAIEV
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