NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214162_1000710

Scaffold Ga0214162_1000710


Overview

Basic Information
Taxon OID3300021108 Open in IMG/M
Scaffold IDGa0214162_1000710 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7511
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, WI
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042733Metagenome157Y
F074408Metagenome119N
F080938Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0214162_10007104F080938N/AMPKNNNVLMNVEGVDFYIHDSLFKHFNSLPKSQQEAIKQTMILGMLNNK
Ga0214162_10007105F042733N/AMDFHVESRIQFSDIPDDIIHNQISKYLLEDKKINKVFHEKDDYYLQMLLFGEIKKLPYVIRYDTNTYKIQNDVLKAYVNRVFRGFKINEEVHSIIVNFDFHHLEWEIDYNEMWLEFKNESDEIICRLYRSASNKSNYILRFYELDYDYQFYRAKVRKAEIKAIFNDLQERTNMKIRDYFEELEN
Ga0214162_10007107F074408N/AMNNFIDVCKLLGNYNDKDVYLYMSSKYKSNSIFYSPNYYLLPKWANPETLTFMQAVKIINFRMKHKNSDNINVKILMDESNNIDTLIQEIKDK
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