NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214162_1003406

Scaffold Ga0214162_1003406


Overview

Basic Information
Taxon OID3300021108 Open in IMG/M
Scaffold IDGa0214162_1003406 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3219
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, WI
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017607Metagenome / Metatranscriptome239Y
F021250Metagenome219N
F033698Metagenome / Metatranscriptome176Y
F054611Metagenome / Metatranscriptome139N
F067416Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0214162_10034061F033698N/AMKFLRYKQAARLTFMGIDDEYNNVASSYYNTKLKLFNNTEINTKLLRFRINNLHNIKLSQNAKLILESVYLPCVFDNNLDIKHDTNIVLRLKNISDSKCFNSSNDNESSPIIFSHSVQSRPEPIVRTLTTTLAGAVSTYNNQALNINYYNSGISFFNPSPDKLYNFTIPNTFTNNTIFEFEITYEMNAGDNIVLADDSDMFYKFQCSLIICDEEEQDLIS
Ga0214162_10034062F054611N/AMSDIDEERLQILMELVNKENPDLDPYVIWVICVNYLLNEQGIYGDEEIAKQLREQRNHELKYDIKVI
Ga0214162_10034063F021250N/AMIIEENLLGWNNIPVKSKEVVYPQSKDEKAPKNYFLGIFCGSRGSGKSYLFTKLLKTLEEKKAYLDDKLIPQRIILISSTANSDSNIIFKSLKNLDWENDVIENYEDDLLKIKMEELKYDLDHSKDYKLYKEAWHNFVKCKSIDDLSDDELKILYSYDFIPFKEFPKPKYPDGFLIHWIIDDMLGTNIFKNGRSTFTNLCIRNRHIIPGNIIIAIQSIMNVPKTIRLNANLLALFKFADSETVLEDVYPLFSAFVKEDQFKELYEYATKEPFNALVIDATRGKPVFKKNFDKVLNIS
Ga0214162_10034065F017607N/AMNINTFYFKKDIVKSREAFNELEKVRLNSKPTKKPLILDQSNIPPDMMNTIRNNNAFENEFWRTHNPYKFTPHIDYKPKYTPPYYAPQETGFGSFSYESYVNNLKRI
Ga0214162_10034066F067416N/AGLRRVYNQSKYFAHNGDSIVTTKWRIGNNSYEPQNIDEQFNSLLQHFNINQDTMSGIYPGINSIGAFRDHSYASICSLNFPEKGNVYTVSGLDTEQTPASIEWIVTSSTFTPAGGLAGNYAITSGVNCLPYLICAYSSHLEIGAGRVINLIP
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.