Scaffold Ga0214162_1017687

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0214162_1017687

Scaffold Ga0214162_1017687

Overview

Basic Information
Taxon OID	3300021108 Open in IMG/M
Scaffold ID	Ga0214162_1017687 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1276
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, WI
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F082171	Metagenome / Metatranscriptome	113	N
F089899	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214162_10176871	F082171	GAG	MDCHSRSATVANYALAINKLFEMRNYPIPADLADKTNMMSKVIHAREREENIARQRSPISKEMYVEIAKRAEASQKDSEDSVLFDCFNLIRVGGFRVAEYAQKTQNKIDELEYGLGNKVVKAFIPTDWSFYNATGRLVTLHSLDGYGDLPKKLKIIFRIQKNRKNGQSITFAADDKHPHICPVRSAYRIFLRSKRLGQSDSQPMGVYENHQGLVKYLTGNKISELLQSVAKKCHPDLTKDKISRFSSHSGRVWAVVLLDEAGMNPDFIKSWLRWMGESY
Ga0214162_10176872	F089899	N/A	TMHTSKKSIIGRALARFFCGLMIGSDVGINAKWIATETNKIADAISRLKKTHTSTSFCYDFSKLKQDHADLKHCRFYHPSQELLSLIWKTVLTRKSPDLDSVQALKLSGLGRLST

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