NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214162_1024027

Scaffold Ga0214162_1024027


Overview

Basic Information
Taxon OID3300021108 Open in IMG/M
Scaffold IDGa0214162_1024027 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1072
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, WI
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055445Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0214162_10240271F055445N/AVAMSRRDKEIETEAARQAHYIQWGLIMGILDPCGHQRGYQRIVAIYIGYLMSGVNFRNKDSLRSNTIKGYAIGINSLFALRGMGAPIVLSDPNNMAGILINNLIKEEDIARQRSPLDSRMYTEMLRRSNASRSLDSEHRTLFDATTIGRYLGPRVSEFAQTTDNTVDYHVYPSGRRVIKAFIANDFQFIDVTGQVIIELSDTSIDVVDRIRVTWRIQKNRQNNQKVTLSCDKSNPTICPVLAALRLVLRARRLSQPDSMPVACYLKKDALAYLTGSRIALHFRSAARAVRPNISKDDEQRYSAHSLRVWACVLLDEAGKSPDYIKKRLRWMGDSFRMYLRDTHVIQDQHREALRASS
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