Basic Information | |
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Taxon OID | 3300021108 Open in IMG/M |
Scaffold ID | Ga0214162_1063729 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 604 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia → Tintinnida → Xystonellidae → Favella → Favella ehrenbergii | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Mendota, Madison, WI | |||||||
Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F019022 | Metagenome / Metatranscriptome | 232 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0214162_10637291 | F019022 | N/A | FNKRMVFHISNYMRETNVWMIRKCRWIFWGLGASVPFYRNTYWEFLGRRVAWKDHYSGTEEEKRAQAEAKRADWGFHPRYEAKYNFSIKT |
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