NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214186_100217

Scaffold Ga0214186_100217


Overview

Basic Information
Taxon OID3300021112 Open in IMG/M
Scaffold IDGa0214186_100217 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 13JUN2008 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)5301
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019600Metagenome / Metatranscriptome228N
F031767Metagenome / Metatranscriptome181N
F033695Metagenome / Metatranscriptome176N
F055458Metagenome / Metatranscriptome138N
F088320Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0214186_1002172F033695N/AMEGFNQEFKLAMEEVQELTKRAAICSSQEHNKPMKIDIKAVQYYRLEVSKRIDYIQDMMEIFPFKTDIFYLWKIHQNILKLLSMILSNEDQKDRCQKLNSYEKVLEKFKNETDYSYWKDYISIHENKILEGS
Ga0214186_1002173F031767GGAMNNNPINQKKIIVKRLERKPRQNYVKTLASLKSIVEETDKLYNQFDSQEQALRKRVSGCQEWTRYWTRGGNLSKKEKSLMYYLEDISNRLIRISDMKNLEEKERLLYYLKVEISLETLHNEKYRKRDVSTNKNS
Ga0214186_1002174F019600N/AMYAPGTDTSKLETGYNLEKSLKEARETVYEGRKAVEELTSSITQLVYEEDRRRKEFTEVLAAIQAVLDTVQNKSITAYRRYKGDAILTSNLKALNSEILKTTSLVSSSDIGEMKEIIEKLANWELNEQ
Ga0214186_1002177F088320AGAAGMSQVSENRRREIEDSKRKLAESIMMINGLLSLLEGHKRMLSERNQADPSNGKISVAKEAVKVMADKIKEVLDLNELRLEENIVTQ
Ga0214186_1002178F055458N/AMATFIKGSMCEILALISAQQKEIIKELEKFPLSKRILVEDEVDEANDKLIELLTELQLTFVIETETEDS
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