NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214205_101059

Scaffold Ga0214205_101059


Overview

Basic Information
Taxon OID3300021118 Open in IMG/M
Scaffold IDGa0214205_101059 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 29JUN2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3731
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011134Metagenome / Metatranscriptome294N
F016243Metagenome / Metatranscriptome248N
F022147Metagenome / Metatranscriptome215N
F022593Metagenome / Metatranscriptome213N

Sequences

Protein IDFamilyRBSSequence
Ga0214205_1010591F022147GAGMQHEKDEYIFQLVTRAVKEIDSSEICRKREIFKILAKSEVSLEMKQILAKSARVISELQHYTEEAYNVSQYILVHYFKIDDLIKKESYPLQEVITFHNKKCRIQKSKDIVTLEKVAIANKLLIKTLSEEIRNALKEQLTLVSKVGSTFTNLSLMYTYIENNDSGLQLETKGRQWSNEYQE
Ga0214205_1010592F016243N/AMNEAQITKVVMRLATRSKWSIEVRRDKVSQMIAEEIQRSDELNQALMELDILLDKLQKVYQEVDDVCEHLLKHYLKSEYIQMHRPSFLNTNTIEDSKAGFIKRLLEVSDSRKSLKVQDSEITTHSIYHKIDPGLRIALNNNIVTLLTIDNELIDLKVIYEFLIENCENE
Ga0214205_1010593F022593N/AMNRQEESKFFRDKVEQIRRYKLANYLAKRDIADILLMEDLEAESRRSLAHNHELLERIDLLLGILEGIGELIIKFKEQEAI
Ga0214205_1010598F011134N/AMSTFAKLEENYDSKETLVDTIKTDLVSQFKVCVDEINTEIIVINESNVTQYEKLNEVLINLRRLDPEWNIDSNSDKPWSFKYMLEGILRCRILEIDISDLDTLDMDGYENFHDSLRDLRIEDPGWSINNTRRDFPILLTSEDIGLMNNHLESREK
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