NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214205_107220

Scaffold Ga0214205_107220


Overview

Basic Information
Taxon OID3300021118 Open in IMG/M
Scaffold IDGa0214205_107220 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 29JUN2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1109
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013499Metagenome / Metatranscriptome270N
F016116Metagenome / Metatranscriptome249N
F083681Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0214205_1072202F083681GAGMILTLKMNEQEGIEELDRLKRVASIRKDMCKVIQLLGYRVKVLKLQLAQLPSEEKNLIRFQLDNALDETIKVVSKISHNFQKEEKKLISELSHQ
Ga0214205_1072203F013499N/AMSETLKDIRTTVSGIKGLVMMLQAYQRDLAGKGEPDPSEGSLETARLAIDQLKEKIETIVGPEEPTGAEGFEVEVHESEDQSQTE
Ga0214205_1072204F016116N/AMAEKLAKHERLALYNLTEREIDQLEEELVKQFPKEQFAETYIEMWQIYRDTKAIQIYNLIEAKYPGSHNEEKRAGIWFEIATLFPHRLHELVKP
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