Scaffold Ga0214204

Basic Information
Taxon OID	3300021119 Open in IMG/M
Scaffold ID	Ga0214204_1000803 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, WI - 23JUN2009 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300021119 Open in IMG/M

Scaffold ID

Ga0214204_1000803 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Trout Bog Lake, WI - 23JUN2009 epilimnion

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	5362
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (16.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

5362

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (16.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Trout Bog, Vilas County, Wisconsin, USA

Coordinates

Lat. (^o)

46.041

Long. (^o)

-89.686

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011367	Metagenome / Metatranscriptome	291	Y
F016494	Metagenome / Metatranscriptome	246	N
F022358	Metagenome / Metatranscriptome	214	N
F039010	Metagenome / Metatranscriptome	164	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214204_10008031	F022358	N/A	AHSFIAHEQETLDEKLDEIIYEFENSTEDDMLRYLRKCFKIIDDSILWANQFLDQAKEKQIDSFRGFYYEMHDDAEIAIHKTLTIISLLEEKNLLSLTPVVKDLTSEIDQIKVLVSNTTLEQVEETLKNYASKRSLNRRKIEDF
Ga0214204_10008032	F011367	N/A	MEKSENPEVNEIDPHWSKEPSESVNRCHNSISHELENLDRILSEMIYNIGNSSEDTILLKLRECLRYIGDIIIHASQFINQTQAVERTHPIGLDSLQEGVRNNMTKTLTITSKLRERNLLQLLPLVKDLTLDLSEIKILVSRTTLRQIENFLERYRFKKSYIRRKIESFQT
Ga0214204_10008033	F039010	N/A	MYPERNYEMEENEDLDASGIDSHRSDDSNEVRCRFHDFMSHEIEILDQILVEMISVAENISENTIISQLKRCFEYIDNMMIYVNQFINQAQSVKMKHFIRFYSLYDGIRHSMMRTLTIINNLRKRNLFQMVPLVKDLTLDLDEIKVLVSRTTLEQVKEVLEGYRIKRSYIRRKIENFI
Ga0214204_10008036	F016494	N/A	MSQKDNNSEEVTIDNFTELTQLVKSTLQTVDELFPPKPEFSFENMVVQFYTLKSRIKRIDHSWKFENTDTSYVFEILKLLDAVNTEEIPDLQQNAKICQRLLHRVRIMRQINPSWSLDVEGMIKLLYPTLNAQLS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214204_1000803

Overview

Ecosystem & Geography

Associated Families

Sequences