NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214211_1001019

Scaffold Ga0214211_1001019


Overview

Basic Information
Taxon OID3300021125 Open in IMG/M
Scaffold IDGa0214211_1001019 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 11AUG2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4348
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011367Metagenome / Metatranscriptome291Y
F022358Metagenome / Metatranscriptome214N
F030412Metagenome / Metatranscriptome185N

Sequences

Protein IDFamilyRBSSequence
Ga0214211_10010192F011367N/AMEESKNSEVKKIDSHWSKELSESESRYYNSISHELELLSRILSEMISNIGDSSEDTILLKSKECLRCVSDIIIHASQFIDQTQAVEREHPIEFNSLQEGIRINMTKTLTITSKLRERNLLQLLPLVKDLTLDLSEIKILVSRTTLKQIENFLERYRFKKSYIRRKIESFQT
Ga0214211_10010193F022358N/AMKNPPKTKIELINLEESDEDPFDLAMKCLDESSDSEDYDEDYGEGTSRGIPMFTEASEIISRAHSFIAHEQETLDEKLDEIIYEFEGSTENDMLQYLRKCFEIIDDSITWANQFLDQAIEKQIDSFTGFYYEMHDDAEIAITKTLTIISLLEEKNFFSLIPVVEDLTSEIDQIKVIVSNTTLEQVEETLKNYASKRSLNRRKIEDF
Ga0214211_10010194F030412N/AMNRPCSKCDKTLFSCEKSAIGFNQPKGEQLTPIGLWNRRDNLVREFIESINLMTVTASRTVGTELQEYLAMRDIIKRIREIDEEWHLIVAPQGDNCLRIMHYDCHCNYNCRCDCRSRKDLHQNEKSTKN
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