Basic Information | |
---|---|
Taxon OID | 3300021125 Open in IMG/M |
Scaffold ID | Ga0214211_1002548 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, WI - 11AUG2009 epilimnion |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2219 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F019600 | Metagenome / Metatranscriptome | 228 | N |
F026810 | Metagenome / Metatranscriptome | 196 | N |
F031767 | Metagenome / Metatranscriptome | 181 | N |
F033695 | Metagenome / Metatranscriptome | 176 | N |
F058942 | Metagenome / Metatranscriptome | 134 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0214211_10025482 | F019600 | N/A | MYTPDTDTSKLETGYNLEKSLKEARETVYEGRKAVEELTSSITQLVYEEDRRRKEFTEILAAIQAVLDTVQNKSITAYRRYKGDAILTSNLKALNSEILKTTSLVSSSDIGEMKEIIEKLANWELNEQ |
Ga0214211_10025483 | F031767 | GGA | MNSNPINQKKIIVKRLERKPRQNYVKTLASLKGIVEETDKLYNQFDSQEQALRKRVSGCQEWTRYWTRGGNLSKKEKSLMYYLEDISNRLIRISDMKNLEEKERLLYYLKVEISLETLHNEKYQKRDVSTNKNS |
Ga0214211_10025484 | F033695 | N/A | MEGFNQEFKLAMEEVQELTKRAAICSSQEHNKPMKIDIKAVQYYRLEVSKRIDYIQDMMEIFPFKTDIFYLWKIHQNILKLLSMILSNEDQKDRCQKLNSYVKVLEKFKNETDYSYWKDYISIHENKILEGS |
Ga0214211_10025485 | F026810 | N/A | MAASINRRILTMTNEEHIDLFKGGLKMLLNFITTAIDILNDNMKGTIGLYYGLEPWGRFLQYYLAMFEKTLVLHKKQVNDQGYLIAERLSLPLMKDIGILIDMCKEGRTPDTLHKLKAYQHHVQHLLSKPNPEWTEELMKIHIFSINSTEFEKIKDKVNDPVLVNKLGVVTNQALVLNPSQIEQSQNSVLDLSLPRQ |
Ga0214211_10025486 | F058942 | N/A | MNKSSNIEENNKVVQYLTEKIDSLELIENFYNKVQDLLGQGVDIKFPPDLDFNYHRELIKIRKQDISFARWTFQLQVIRLL |
⦗Top⦘ |