NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214211_1002548

Scaffold Ga0214211_1002548


Overview

Basic Information
Taxon OID3300021125 Open in IMG/M
Scaffold IDGa0214211_1002548 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 11AUG2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2219
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019600Metagenome / Metatranscriptome228N
F026810Metagenome / Metatranscriptome196N
F031767Metagenome / Metatranscriptome181N
F033695Metagenome / Metatranscriptome176N
F058942Metagenome / Metatranscriptome134N

Sequences

Protein IDFamilyRBSSequence
Ga0214211_10025482F019600N/AMYTPDTDTSKLETGYNLEKSLKEARETVYEGRKAVEELTSSITQLVYEEDRRRKEFTEILAAIQAVLDTVQNKSITAYRRYKGDAILTSNLKALNSEILKTTSLVSSSDIGEMKEIIEKLANWELNEQ
Ga0214211_10025483F031767GGAMNSNPINQKKIIVKRLERKPRQNYVKTLASLKGIVEETDKLYNQFDSQEQALRKRVSGCQEWTRYWTRGGNLSKKEKSLMYYLEDISNRLIRISDMKNLEEKERLLYYLKVEISLETLHNEKYQKRDVSTNKNS
Ga0214211_10025484F033695N/AMEGFNQEFKLAMEEVQELTKRAAICSSQEHNKPMKIDIKAVQYYRLEVSKRIDYIQDMMEIFPFKTDIFYLWKIHQNILKLLSMILSNEDQKDRCQKLNSYVKVLEKFKNETDYSYWKDYISIHENKILEGS
Ga0214211_10025485F026810N/AMAASINRRILTMTNEEHIDLFKGGLKMLLNFITTAIDILNDNMKGTIGLYYGLEPWGRFLQYYLAMFEKTLVLHKKQVNDQGYLIAERLSLPLMKDIGILIDMCKEGRTPDTLHKLKAYQHHVQHLLSKPNPEWTEELMKIHIFSINSTEFEKIKDKVNDPVLVNKLGVVTNQALVLNPSQIEQSQNSVLDLSLPRQ
Ga0214211_10025486F058942N/AMNKSSNIEENNKVVQYLTEKIDSLELIENFYNKVQDLLGQGVDIKFPPDLDFNYHRELIKIRKQDISFARWTFQLQVIRLL
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