NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214187_1001916

Scaffold Ga0214187_1001916


Overview

Basic Information
Taxon OID3300021126 Open in IMG/M
Scaffold IDGa0214187_1001916 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 24JUN2008 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3831
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008991Metagenome / Metatranscriptome324N
F015440Metagenome / Metatranscriptome254N
F015585Metagenome / Metatranscriptome253N
F016361Metagenome / Metatranscriptome247Y
F017436Metagenome / Metatranscriptome240N

Sequences

Protein IDFamilyRBSSequence
Ga0214187_10019163F016361N/AMCKKRELTEEPLINRVHQATNERSIQTLLQKQLALMALIDTMTITMDPEKGKKVFQEIVSIMKELKNMEARCTC
Ga0214187_10019164F015585N/AMTKFRLHLYSKRLRIKYRFVKLREIRMSQKNTESNQRLIKVINHCSRVAESKEVKELQLSPQLGELIKNLAGKGKEWSFILITYPKKNSEVQGKPPSEVKAEPGFSEEEEFYSSPW
Ga0214187_10019167F015440N/AMEGISENERNFQLFKAGLSMVSCLTGEAIRVLEANLKGLQGLFFGLGQWGVIMSICIEYHEKSLVKHKELICERGAKIAEALTLPLIRNLRQLRDLCNKSKSEQTLLELNTFKFHIDYLSNMRQEQWTQDMLKTHIFIVIQQEMDNILNVLNPKVTEPLDKNQESNIRQEWTRVLSL
Ga0214187_10019168F017436N/AMDGQYRKMFRETVITVQRLSVSAAAFTVTERRNNIVPQKTTTRCRTVVKMMINEIKDDIAALSRNSDRYRFKRIQLALYILLSEALSIEGSNERYKGLKDMYYFMDRLKATTFDEWKNFLITGSTEFFDNRF
Ga0214187_10019169F008991N/AMHLTVKITEQVEKKLEAVLKGKYNNKTIWMYYKVSLQLLRDIIENLIACHHTTYPLAEKDLYYEQNKVQIVDWIQWIQNRTSSDKLVDLDKLLSKLIKDKAENLVEALTEENPSDRMTTLSMLQMSIQIALFMETQQLLRSPMVIQFCEENGWAV
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