NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214196_1007411

Scaffold Ga0214196_1007411


Overview

Basic Information
Taxon OID3300021132 Open in IMG/M
Scaffold IDGa0214196_1007411 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 25AUG2008 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1852
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026798Metagenome / Metatranscriptome196N
F057099Metagenome / Metatranscriptome136N
F085120Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0214196_10074112F026798N/AMDKSKEKLISHNCTEESSKSKRGNNVNINKVIDENNQLTAIEKLALRRGIERVNRRRDNQQAKINKMVNSLDVKQNFQDMNNQLKLQILFNTILKLKSVYPSKSVMWKAPNNNTLPPYKSVRLENKLLKKGLRKKCSSYPNKEKIIENWYKLMKVQESL
Ga0214196_10074114F085120N/AMKNQVRIIQLLNRLEKMLKIEIEKARTDQDKDAIKLLDKLYDLVKKTEVNYLAQKH
Ga0214196_10074116F057099N/AMKILRKDWELINKIAWNILNLKLEDSKKTLNLGSSIDAFKLLGILNTPVFVHILISSLCRTINLIRPETREMDIVRIANRALLIMREIKKRRPNWKFQFCPNNSANSKETLKKQKSNQKYFSKISKLKNFLIINQILSQIEVDKSYEENSHLFEALKGTKREGQNSKLKWLFYHKL
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