Scaffold Ga0214175_1004052

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0214175_1004052

Scaffold Ga0214175_1004052

Overview

Basic Information
Taxon OID	3300021133 Open in IMG/M
Scaffold ID	Ga0214175_1004052 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, WI - 09AUG2007 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	2567
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (90.91%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F083677	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214175_10040525	F083677	GGA	MSHFDSMELDELQSYFSDFYKDFYGYRPRFATNQQWIDREWLIEAISTIHMDMDNLKKTPEGRAQLREEGWSIDEKEYV

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