NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214175_1012712

Scaffold Ga0214175_1012712


Overview

Basic Information
Taxon OID3300021133 Open in IMG/M
Scaffold IDGa0214175_1012712 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 09AUG2007 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1175
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006266Metagenome / Metatranscriptome377Y
F009598Metagenome / Metatranscriptome315Y

Sequences

Protein IDFamilyRBSSequence
Ga0214175_10127121F006266N/AKGVVFPLLEWPIYKATDHDLRNNEVLERLISFDLGIKNDPTVISFFFRDPINEIIYLHRQIKIPSGETPDEYVHYLLDRESKGVPIALPHDAATAGRYTLTEQSVREVFEDSYGLNCISGAILNPVNDQGKVTNHKAYGINIMRLMMERKTLLVNESCKEFLDEARNYAIDEMGRFSDPDDHIDSARIGILALIQGHGESVVSRANTFEARRIPVVEGKMQRI
Ga0214175_10127122F009598AGGMLFKQNLVVENLASPSGNRGIAEKVCHEAYMKMVDYLRLTQAKNTYNRFTDYHYLNIPVSESTEPIRGLDYIHPIVTPGIDYATAVITKCLMPDGKVNFEFERFDESDQDGAEQATDMVKYFLNNKNNSYMTIRDWAQDALLHKNGIVMVMPVRENIIQYKEVT
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