NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214171_1011639

Scaffold Ga0214171_1011639


Overview

Basic Information
Taxon OID3300021134 Open in IMG/M
Scaffold IDGa0214171_1011639 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 02JUL2007 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1427
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026798Metagenome / Metatranscriptome196N
F038078Metagenome / Metatranscriptome166N
F043767Metagenome / Metatranscriptome155N

Sequences

Protein IDFamilyRBSSequence
Ga0214171_10116391F026798N/AMNKSKEKSISHNCTEKSSKSKRGNNVNINKVIDENNQLTAIEKLALRRGIERVNRRRDSQQAKIIKMVNSLDVKQNFQDMNNQLKLQILFNTILKLKSVYPSKSAMWK
Ga0214171_10116392F043767N/AMENQEQGQSNGHSLFFSRHPSEANAYRRKRLWREKALEALDLLNHIKLEEMATSEHNIQVYEAIRERLKMLKMIDPERKIHQDTLVETTVIKYDCPMCLPTDDSNYEIEPDS
Ga0214171_10116393F038078N/AMAEKYEKCTVEMKKSKRESIERFFSLINFIFFMSEEEDITLLRYLHEAKTKVLANSEYWSLVDYTGMTIGRIFRCIDTINVEEKWDSKSNKEWFHEMIKSMNTLKDLHPQWHLTKQDVDRYNTTCPCSQCSTEKGREDTISSSISKLNI
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