NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214167_1034326

Scaffold Ga0214167_1034326


Overview

Basic Information
Taxon OID3300021136 Open in IMG/M
Scaffold IDGa0214167_1034326 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 hypolimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1129
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6864Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040990Metagenome160Y
F100256Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0214167_10343262F040990GGTGGMNYYYEIDPKYDGTVFGDKWRYWCMYNCSPADNGKMCFKTHDDFVARSKRVWLENANGVYMVKPAWDARRQRVDRHEFTLIKLRAKTVKWWHDESG
Ga0214167_10343264F100256GAGMIKVNVMDPAFNRAWCRASRALPVHDLERPRQYGARWREAYRCRVEPDASAWPHNYYIFDQDADYTWFMLRWG

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