NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214165_1013109

Scaffold Ga0214165_1013109


Overview

Basic Information
Taxon OID3300021137 Open in IMG/M
Scaffold IDGa0214165_1013109 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 hypolimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2371
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6864Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024484Metagenome / Metatranscriptome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0214165_10131092F024484AGTAGMLIPTNYTTDPKLFQEACSQLPKAGMKTTINQPTGNFFYDPWELKEEYKGTIWETLYNSLPVVKGEARIIILDPGQSYTAHADIDDRYHLNILGDESFLIDLMREQMHKLNQDGIWYDMDAGFLHTAANFGRRARVQLVIRKLLKKNKLVNPIEVALTTTMTNADHARYLFDNTISIWLNEANKHGYITNFAYSSPFVKFTIEQDKLDSLKHILPDEFKIL
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