NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214165_1048595

Scaffold Ga0214165_1048595


Overview

Basic Information
Taxon OID3300021137 Open in IMG/M
Scaffold IDGa0214165_1048595 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 hypolimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)923
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6864Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020485Metagenome223Y
F035995Metagenome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0214165_10485952F035995AGGMSVVTPMQVEARLKDLSKLIDEAHNDLVDAEATYHRHKADYEIAMARSRMLYAMKSAPSGKNYTVGEREDMALLENEEMHRTMAADEAVVKANRANVARLRVQVDIARSIGTSVRTGMDA
Ga0214165_10485953F020485N/AMKLFCKHKQHWEITNGKLILGAETDEYLASQLMLMTARLEAEIRLDIYDQICALDLVKDRKKIVKLGIENVAMLVQDACAQIAIGEYK
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