NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214164_1001695

Scaffold Ga0214164_1001695


Overview

Basic Information
Taxon OID3300021138 Open in IMG/M
Scaffold IDGa0214164_1001695 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12235
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (17.65%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6864Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053787Metagenome / Metatranscriptome140N
F067402Metagenome / Metatranscriptome125N
F075719Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0214164_10016951F067402N/AMQMFYFLNTCRLSIIFLLSSKRDDFSRLRIFNVIGSFLQQNFLRRVKSKMDTSFVANVHEVVFATFLATYCSPALNLLISKFFKAHMAIYREGNVSYNTVMIVNTILMDFFIKYQRMFSRNIGMEFVEHVLSRLIGYEGFWQLINHLNIHIFYLTYRPQILVILSDALLGTYGSRNFNRISNKIPPYCIGEVECEEFRTNRSKFIFFDTF
Ga0214164_10016952F075719AGGMTLKDLVVEPRGGTSVVLDMTIKDLVKESKLDTFDVEESHKDTLDPDMSLKDLACDSVGNYPRVLIPRTDLMSELSHNRKVCDQIMKSKHFKGKHPQKGEPKESSTGPRGFGTLMEPNTLDKKYLTGNFLGKMVPKTGRSRAGFERLMEFGESESSDEEVNFRNHKKVVGLKPPRQLNSNRKFGTVVQPANTSRFDNVYHRVYEHQKQVVEIDNENWFRKLCCCRKSPKEIVTIVDFSVGTRLKKDTSAV
Ga0214164_10016955F053787N/AMSEQDEIEIEVVEEQSSQNDRAKLEKSIRKDIFLAAKMAHHIMKNVEYLNKQGHNSASECANQTYLKVMDMATQVESYFSDKRKAKVVTSNQDASEVNKVDKQALEKRIKENMKESLRLLNALLLALKTNKEKVCAYGDPDPSFGLINETLMATVRLSTNLYEAFQLEEVREKDLSLSEIQQINSIPIEDSTGELTSDSINQQSQQH

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