NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214166_1026912

Scaffold Ga0214166_1026912


Overview

Basic Information
Taxon OID3300021139 Open in IMG/M
Scaffold IDGa0214166_1026912 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1392
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6864Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022358Metagenome / Metatranscriptome214N
F030412Metagenome / Metatranscriptome185N
F074379Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0214166_10269121F022358N/AMKNPPKTKIELINLEESDEDPFDLAMKCLDESSDSEDYDEDYGEGTSRGIPMFTEASEIISRAHSFIAHEQETLDEKLDEIIYEFEGSTENDVLQYLRKCFEIIDDSITWANQFLDQAIEKQIDSFTGFYYEMHDDAEIAITKTLTIISLLEEKNSFSLIPVVEDLTSEIDQIKVLVSNTTLEQVE
Ga0214166_10269122F030412GAGMFKNPKSKLRLRSPKMNRPCSKCDKTLFSCEKSAIGFNQPKGEQLTPIGLWNKRDNLVRELIESLNLMTVTVSRTIGTELQEHLIMRDLIKRIREIDDEWHLIVAPQGDNCLRIMHYDCHCNYNCRCDCRSRKDLHQNEKSTKN
Ga0214166_10269123F074379N/AVHKEYENRYPLWAEKVKEVTTQISAIDARWGLKLINTQCRHILIRQSDCTCDPPFNYQLTSISDLESYVLSKQNKTPTIDELMRKRRVLVNELIKFIEDCIIDGYYPQFDLTWVVHLRRISQKILNIDPHWKLECIRETFKCLKIQRVSCDCGHQK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.