NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214192_1017816

Scaffold Ga0214192_1017816


Overview

Basic Information
Taxon OID3300021142 Open in IMG/M
Scaffold IDGa0214192_1017816 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 29JUL2008 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2620
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009462Metagenome / Metatranscriptome317Y
F026556Metagenome / Metatranscriptome197Y
F063276Metagenome129Y
F070810Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0214192_10178162F063276AGGAMPDSSFRQNLDFFMVMLLGLAGLVFAVYWNYTHPHVVVKYDCSIAEISPDYPIPVKEACRQLRANKI
Ga0214192_10178163F070810GGAMETVNKVYEIRIPWDNQKEYWWNELCADIVEVFGLPGDRYTSHPFSDYMLFYFKSKKDFHLCQILVSDKI
Ga0214192_10178165F026556GGAGGMTSALIKLMFGIALILLALVFGPIVGIWSLNTLFPTLAIPYTWQTWLAFNCLFGGSIATRLKR
Ga0214192_10178167F009462AGGAGMELHESVRDTYTEQVIKEHEGFRLVLKKHEVLNPKGLFSVDMEQQSLKDGVVQDTAVYNFFMTKDEMATLASALTA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.