NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214192_1055607

Scaffold Ga0214192_1055607


Overview

Basic Information
Taxon OID3300021142 Open in IMG/M
Scaffold IDGa0214192_1055607 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 29JUL2008 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1205
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015585Metagenome / Metatranscriptome253N
F016361Metagenome / Metatranscriptome247Y
F070035Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0214192_10556071F070035N/AHGEYDDQYSVWRDEILDVVYQLIRIDTNWRLKVVTKDCGHIIIRHEECTCDEPFHYRTKIERKRVSRPRKRILPTIPQLIEKRDSNVRDLLFMINESIVDYDYPRDNITWVMELRKIIQRILDIDPSWKLECIRVPAQCMKIKREQCNC
Ga0214192_10556072F015585AGGAMSQKNTESNQRLIKVINHCSRVAESKEVKELQLSPQLGELIKNLAGKGKEWSFILITYPKKNLEVQGKPPSEVKAEPGLSEEEKFYSSPW
Ga0214192_10556073F016361N/AMCKKRELTEEPLINRVRQPINERSIQTLLQKQLAIMALIDTTTITMDPEKGKEVFQEIVSIMKELKNTDATCTCSPN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.