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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021168 Open in IMG/M |
| Scaffold ID | Ga0210406_10000006 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 350090 |
| Total Scaffold Genes | 292 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 235 (80.48%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Massachusetts | |||||||
| Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F053506 | Metagenome / Metatranscriptome | 141 | Y |
| F086113 | Metagenome | 111 | Y |
| F101777 | Metagenome | 102 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0210406_10000006138 | F101777 | AGCAGG | MPQPTLTSCFALAAILAFPFPANAPWDKPADQWTAGDINKILEDSPWAPSKVVIETKYTQRYTDPLTGIVNTSGINAQNTNPVPGVEISRGSTPAYYVKWMSAKTMRLALEKIHRMRWNVTGGAQPPLKVEDSPDYVVAIEGDEPMRILRDAKEDLHDTVFIELDNGFTLDLASVQFLDGADADPMRTEFHFPRQIEGKPAIDPDSERVIFHCRATAKKEMPSRETVIAIRVDFHPKDMRARNLPDL |
| Ga0210406_10000006275 | F086113 | GAGG | MFSAMLLTISVVALSQFAVYYWRALVMGVAAQPVSERVLEAARVPDGALTGQHFKVFAELHDLTPDLRPGPRGLGFVRLYFYVVHFFGEALGRFSDSIAQWTERERVLCTRYAAVQIDRRLQANLAMAASIRSC |
| Ga0210406_1000000674 | F053506 | AGGAGG | MKPTRCLLVSAAALAMILAAAANAANTSLPTSIFAARTVYVNNQSGFAEIYNTAYLELARWGRFEPVESPSKADLVIVLTGSSYVRIVPNGKAPSYDPNKTSVRPADTPEAAPAGYTRVTLQEVKGGRTLWSGLVKTDGPRVKGRLLDGLREAYDQADKIRYKR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |