NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210406_10004112

Scaffold Ga0210406_10004112


Overview

Basic Information
Taxon OID3300021168 Open in IMG/M
Scaffold IDGa0210406_10004112 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15742
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002000Metagenome / Metatranscriptome606Y
F024597Metagenome / Metatranscriptome205Y
F053237Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0210406_1000411210F002000AGGAGMTNQLQLISGYLEMEVYPKALGKTRETMKELHTLATSLTGLTHVGMTVPKDGAVVVPHGSTVVSHEDVNVDVGSNEVRSVDKNEVRVGYGEDNPKTK
Ga0210406_100041124F053237GAGGMNNIGQHAQPNRELVERAIAEVLGIAQRQGITPADFVRMLDSGMRMSDLLTAMDPLTNSYRVIGGDCSW
Ga0210406_100041125F024597GGALTTLWLCFVVQLGLAFGLAGLFWPDKFMPLFETLMFPWAASRSAIRANGITAIALSLLLLVTRLTGYR
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