NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210406_10023726

Scaffold Ga0210406_10023726


Overview

Basic Information
Taxon OID3300021168 Open in IMG/M
Scaffold IDGa0210406_10023726 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5663
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000042Metagenome / Metatranscriptome3762Y
F003634Metagenome / Metatranscriptome476Y
F005767Metagenome / Metatranscriptome391Y

Sequences

Protein IDFamilyRBSSequence
Ga0210406_100237261F005767N/AVLEKDIAESRQALAVRDSQLERLTSALSNEACSKMAAIEANARLLLEEYGGFLPRHGNECAVQIKEAAAQMERLRQEMLGPPGFNQADQKAA
Ga0210406_100237264F003634N/AMHSIMDSFSTIPLRWGVALIVSAFGIAPVCLRVLETDGARAKRAEQKKRKELQSLAERISSYGRTVHKRYPSGDVIVSERDLAEQLRKRPDAVVNALNLLLNEQKVQRAPLNGYWKLNA
Ga0210406_100237267F000042AGGAGMTNIKFVVKVNRGGTRVPEYVERVDPTPIHMTTNRTKALVMGKFMAEDAVNALQSSRCTPELVSVQVLP
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