NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210406_10166730

Scaffold Ga0210406_10166730


Overview

Basic Information
Taxon OID3300021168 Open in IMG/M
Scaffold IDGa0210406_10166730 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1843
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007987Metagenome / Metatranscriptome341Y
F047601Metagenome149N

Sequences

Protein IDFamilyRBSSequence
Ga0210406_101667302F007987AGGAGMKANPAKQLNQTENDSFSSTTTIAALLFLAAKFPHRQFNSAELCILSGIGRTAMSQIKNAQDTPFSLGKCTLQRLDAWLAKRPGFKQQ
Ga0210406_101667303F047601GAGVFARLLEQVRQSERGKKPQPTLFMTETQLKKLVNEAVSLHRALTTYSERLKALKADLIREAQRHKEDFTLTDGGGSRWTACGTDGCIARVNFPAPALLSHIDTEDETFDKILALAGESLDGLFDSVHYLKPIADFRDEVAAALPRRAATQLVELCQVECSPRVSFETAETKTKER
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