NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206687_1069781

Scaffold Ga0206687_1069781


Overview

Basic Information
Taxon OID3300021169 Open in IMG/M
Scaffold IDGa0206687_1069781 Open in IMG/M
Source Dataset NameMetatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6208
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (60.00%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008747Metagenome / Metatranscriptome328Y
F032291Metagenome / Metatranscriptome180Y
F103296Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0206687_106978111F032291AGGVTAVGVPLIAPVVESKDNPAGSDAETVQEVIGPPLTVGVVVVIEVPFVNVNELGLYERPDGATSLTTIVTVAVSLPPVLLAVIV
Ga0206687_106978112F032291AGGAVTMLGVPLIAPVDESKDKPAGREGETDHDVMVPPLTVGVAVVIAVPLVSVNELGLYVSEDGATSLTTMVTVAVSLPPVLPAVMV
Ga0206687_106978113F008747AGGAVIAVGVPDIAPVEASKDSPAGSDGDTDQEVIVPPFTVGVTVVIAVPLVSVNELGL
Ga0206687_106978114F103296AGGAGMSFTTMVTVAVSLPPVLLAVMVYKVDEVTAVGVPEIAPVVESKAKPAGRVGETDHEVIVPPLTVGVTVVMPVPFVSVNEFGL
Ga0206687_106978117F103296N/AMVRTAVSLPPVFSAVTVYEADEVTAVGVPLIAPVDESKDNPAGSEGETDQDVMVPPLADGVVVVIAVPFVRVKLFGL
Ga0206687_10697812F103296N/AMVTSAVSLPPVLLAVIVYVAEEVTADGVPPMAPVEASKDKPAGSDGNTDQEVIVPPFTVGVTVVIAVSFVSVNELGL
Ga0206687_10697813F008747AGGAVTAEGVPLIAPEDESKDKPAGREGETDHEVIVPPLEVGVVVVIAVPLVRVNEFGL
Ga0206687_10697815F032291AGGAVTSVGVPLMVPVEESIANPAGRDGEIDQEVTGPPLVVGVTVVMAVPFVSVNELGLYVSEDGATSLTTMVTVTESLPPVLLPVTV
Ga0206687_10697816F032291N/AVEESKIKPVGSVGEADQEVTIPPVIDGVTVVMAVPFVNVNEFGLYAKEDGVTSLTTMVTVAVSLPPVLVAVTV
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