Basic Information | |
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Taxon OID | 3300021169 Open in IMG/M |
Scaffold ID | Ga0206687_1217376 Open in IMG/M |
Source Dataset Name | Metatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015 (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 539 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 36.7468 | Long. (o) | -122.0193 | Alt. (m) | Depth (m) | 30 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F052608 | Metagenome / Metatranscriptome | 142 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0206687_12173761 | F052608 | N/A | KLEVLGRFKEKVDKIDEFVTELKNFDVTLKEIDAWMTGADKELDTIKTASDKMTPEDRVSYTMELTEDVAAKVDVITKCVAAEAALLPQGDQVPQDAQDYKAELKRIQDYVIDLHKRVMATCDSFSEDVKFWAEYKTGIRGFKPWLTAAEKTSTEGLSKPQTLDEANAMFAVVKAFEAG |
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