NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206687_1242489

Scaffold Ga0206687_1242489


Overview

Basic Information
Taxon OID3300021169 Open in IMG/M
Scaffold IDGa0206687_1242489 Open in IMG/M
Source Dataset NameMetatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1416
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Dictyochophyceae → Dictyochales → Dictyocha → Dictyocha speculum(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051667Metatranscriptome143N

Sequences

Protein IDFamilyRBSSequence
Ga0206687_12424891F051667N/AAFSCFQLLAPNLDQAMKSCFSATVIGVCLGQDVFLANPSKRVSQMDLVRAKSTKQSGRLGGSSPAEIAEKINGHIVKLGLPVRECSEYTLAELNDLVREMFPHLNQDLDDIYGSAADLRTRRFSTLAEYEKHWEEDAEHAVDIIRDAKCAEAVMLWAHHLSEGGKQALSKKGLPTVPVYNAEKATSKTYESSFNCVTGHSMSADHTSDHVWPHWPEDLHYTAKGHGAYPFWSGGGSDDGTADLEVWWSERLQSEKFYHSTCTQSYLGTGVPCTHLLVGGQPDPKGYLYTDSKCCTTEPSSSGFGPSQKLAASQSDFMDDFTYQGEVDFSGVHYQGKAKYYLMTLPSTQPVQDFWYFTDMNDMPVQQGEAGTGPTDQGYPESRGHTIWHDYDQSSFKYDQIDASIFQVPDICKSTSQTCAF
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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