Basic Information | |
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Taxon OID | 3300021170 Open in IMG/M |
Scaffold ID | Ga0210400_10000010 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 390471 |
Total Scaffold Genes | 336 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 278 (82.74%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Massachusetts | |||||||
Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000169 | Metagenome / Metatranscriptome | 1788 | Y |
F000783 | Metagenome / Metatranscriptome | 893 | Y |
F000941 | Metagenome / Metatranscriptome | 826 | Y |
F010047 | Metagenome / Metatranscriptome | 309 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0210400_10000010105 | F000783 | GAGG | MVAAAGVWKKKRDDLKAKRNSLFAAYAKDPQNFHLAREIKDLDDEIADCTQHVEQERRAEQRAASPAAKLVTTHKQ |
Ga0210400_10000010219 | F010047 | N/A | MSTLASSPAAAPRPQGSFQRLWRALRQVFHEATGAVFAVLALGWLNSALRAWTRDVALWLIVLAVVVALLFLFFAVTSFRKARRV |
Ga0210400_10000010249 | F000941 | N/A | MNITCSDRDRIFEDGTPTEWAALEAHGASCPLCAEEIRAWKSLSVVAEELRDYSDCPSFWPRIERALAEEAARNARGAGRRSWFSFLPNISLGWQTALAGAFVLLLTISAGWLFIHHPGRTVDDNNSLLKSGSLKEVESAQAAYERAIDKLAVQAQPQLENPATPLLANYHEKLLVLDSAIGELRAQAGMNPSNAQLRYQLLAMYQEKQHTLEEVLEAKP |
Ga0210400_10000010321 | F000169 | GGAGG | MARKSKLTQVAVRIGTAMGKADRRVQKYAKAGTLAKKELEDISKQVDALKRQLRKTAKRLKRALS |
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